ISLAMABAD, Pakistan — The Pakistani military continues to nurture a broad range of militant groups as part of a three-decade strategy of using proxies against its neighbors and American forces in Afghanistan, but now some of the fighters it trained are questioning that strategy, a prominent former militant commander says.

Militant groups, like Lashkar-e-Taiba, Harakat-ul-Mujahedeen and Hizbul Mujahedeen, are run by religious leaders, with the Pakistani military providing training, strategic planning and protection. That system was still functioning, he said.

The former commander’s account belies years of assurances by Pakistan to American officials since the Sept. 11, 2001, attacks that it has ceased supporting militant groups in its territory. The United States has given Pakistan more than $20 billion in aid over the past decade for its help with counterterrorism operations. Still, the former commander said, Pakistan’s military and intelligence establishment has not abandoned its policy of supporting the militant groups as tools in Pakistan’s dispute with India over the border territory of Kashmir and in Afghanistan to drive out American and NATO forces.

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